Reverse transcription-polymerase chain reaction (RT-PCR) is currently the gold standard in COVID-19 diagnosis. It can, however, take days to provide the diagnosis, and false negative rate is relatively high. Imaging, in particular chest computed tomography (CT), can assist with diagnosis and assessment of this disease. Nevertheless, it is shown that standard dose CT scan gives significant radiation burden to patients, especially those in need of multiple scans.

Instructions: 

 

“Dataset-S1” contains two folders for COVID-19 and Normal DICOM images, named as “COVID-S1” and “Normal-S1”, respectively. Within the same folder, three CSV files are available. The first one, named as “Radiologist-S1.csv”, contains labels assigned to the corresponding cases by three experienced radiologists. The second CSV file, “Clinical-S1.csv”, includes the clinical information as well as the result of the RT-PCR test, if available. The third file is named “LDCT-SL-Labels-S1.csv” and contains the slice-level labels related to COVID-19 cases. In other words, slices demonstrating infection are specified in this file.

Each row in this CSV file corresponds to a specific case, and each column represents the slice number in the volumetric CT scan. Label 1 indicates a slice with the evidence of infection, while 0 is assigned to slices with no evidence of infection.

Note that slices in each case should be sorted based on the “Slice-Location” value to match with the provided labels in the CSV file. The Slice Location values are stored in DICOM files and accessible from the following DICOM tag: (0020,1041) – DS – Slice Location

 “Dataset-S2” contains 100 COVID-19 positive cases, confirmed with RT-PCR test. 68 cases have related imaging findings, whereas 32 do not reveal signs of infection. These two groups are placed in two folders of “PCP-Lung-Positive “and “PCP-Lung-Negative”. “Dataset-S2” also includes a CSV file, namely “Clinical-S2.csv” presenting the clinical information.

 

Categories:
759 Views

The dataset consists of two classes: COVID-19 cases and Healthy cases 

Instructions: 

Unzip the dataset

Categories:
823 Views

DATA PROVIDED PRIOR TO ACCEPTANCE OF THE ASSOCIATED MANUSCRIPT.

This dataset contains video sequences and stereo reconstruction results supporting the IEEE Access contribution "Stereo laryngoscopic impact site prediction for droplet-based stimulation of the laryngeal adductor reflex" (J. F. Fast et al.).

See readme file for further information.

Instructions: 

See provided readme file for instructions.

Categories:
69 Views

This dataset has information of 83 patients from India. This dataset contains patients’ clinical history, histopathological features, and mammogram. The distinctive aspect of this dataset lies in its collection of mammograms that have benign tumors and used in subclassification of benign tumors. 

Instructions: 

This datasest contains a zip folder of 80 mammograms and an excel file having mammographic features, histopathological features as well as clinical fatures of all the patients. 

Categories:
528 Views

Of late, efforts are underway to build computer-assisted diagnostic tools for cancer diagnosis via image processing. Such computer-assisted tools require capturing of images, stain color normalization of images, segmentation of cells of interest, and classification to count malignant versus healthy cells. This dataset is positioned towards robust segmentation of cells which is the first stage to build such a tool for plasma cell cancer, namely, Multiple Myeloma (MM), which is a type of blood cancer. The images are provided after stain color normalization.

Instructions: 

IMPORTANT:

If you use this dataset, please cite below publications-

  1. Anubha Gupta, Rahul Duggal, Shiv Gehlot, Ritu Gupta, Anvit Mangal, Lalit Kumar, Nisarg Thakkar, and Devprakash Satpathy, "GCTI-SN: Geometry-Inspired Chemical and Tissue Invariant Stain Normalization of Microscopic Medical Images," Medical Image Analysis, vol. 65, Oct 2020. DOI: https://doi.org/10.1016/j.media.2020.101788. (2020 IF: 11.148)
  2. Shiv Gehlot, Anubha Gupta and Ritu Gupta, "EDNFC-Net: Convolutional Neural Network with Nested Feature Concatenation for Nuclei-Instance Segmentation," ICASSP 2020 - 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Barcelona, Spain, 2020, pp. 1389-1393.
  3. Anubha Gupta, Pramit Mallick, Ojaswa Sharma, Ritu Gupta, and Rahul Duggal, "PCSeg: Color model driven probabilistic multiphase level set based tool for plasma cell segmentation in multiple myeloma," PLoS ONE 13(12): e0207908, Dec 2018. DOI: 10.1371/journal.pone.0207908
Categories:
1010 Views

A new workflow is proposed to update the intraoperative electron radiotherapy (IOERT) planning refreshing the position and orientation (pose) of a virtual applicator with respect to the preoperative computed tomography (CT) with the actual pose during surgery. The workflow proposed relies on a robust registration of the preoperative CT and intraoperative projection radiographs acquired with a C-arm system. The workflow initially performs a geometric calibration of the C-arm using fiducials placed on the applicator.

Instructions: 

These are the raw data and some preliminary data retrieved from them.

Categories:
22 Views

A fundamental building block of any computer-assisted interventions (CAI) is the ability to automatically understand what the surgeons are performing throughout the surgery. In other words, recognizing the surgical activities being performed or the tools being used by the surgeon can be deemed as an essential steps toward CAI. The main motivation for these tasks is to design efficient solutions for surgical workflow analysis. The CATARACTS dataset was proposed in this context. This dataset consists of 50 cataract surgery.

Instructions: 

The dataset consists of 50 videos of cataract surgeries performed in Brest University Hospital. Patients were 61 years old on average (minimum: 23,maximum: 83,standard deviation: 10). Each surgery was recorded in two videos: the microscope video and the surgical tray video. The frame definition was 1920x1080 pixels (full HD resolution) for both types of videos. The frame rate was approximately 30 frames per second for the tool-tissue interaction videos and 50 frames per second for the surgical tray videos. Microscope videos had a duration of 10 minutes and 56 s on average (minimum: 6 minutes 23 s, maximum: 40 minutes 34 s, standard deviation:6 minutes 5 s). Surgical tray videos had a duration of 11 minutes and 3 s on average (minimum: 6 minutes 30 s, maximum: 40 minutes 48 s, standard deviation: 6 minutes 3 s). In total, more than nine hours of surgery (for each video type) have been video recorded. For more details about the dataset and the different tasks proposed, please refer to the links provided in the abstract.

Please note that the evaluation scripts (for the microscope test set) used in the challenges are available now. For CATARACTS 2018, in addition to the videos, we provide the images (images.zip) used in the challenge and the ground truth.

If you use this dataset, please cite the following paper:
Al Hajj, Hassan, et al. "CATARACTS: Challenge on automatic tool annotation for cataRACT surgery." Medical image analysis 52 (2019): 24-41.

Categories:
1026 Views

Computer-assisted intraoperative intraocular lens (IOL) positioning and alignment is a valuable study. It is important to precisely position and align the axis of IOL during surgery to achieve optimal post-operative astigmatism correction. The cataract surgery dataset is proposed in the research paper “Computer-aided Intraoperative Toric Intraocular Lens Positioning and Alignment During Cataract Surgery”.

Categories:
509 Views

TEST6

Instructions: 

TEST

Categories:
63 Views

There is an unmet need for quick, physically small, and cost-effective office-based techniques that can measure bone properties without the use of ionizing radiation. The present study reports application of a neural network classifier to the processing of previously collected data on very low power radiofrequency propagation through the wrist with the goal to detect osteoporotic/osteopenic conditions. Our approach categorizes the data obtained for two dichotomic groups. Group 1 included 27 osteoporotic/osteopenic subjects with low BMD (DXA T score below - 1) measured within one year.

Categories:
124 Views

Pages