Medical Imaging

Giemsa-stained thin blood smear slides from 150 P. falciparum-infected and 50 healthy patients were collected and photographed at Chittagong Medical College Hospital, Bangladesh. The smartphone’s built-in camera acquired images of slides for each microscopic field of view. Initially, the images were manually annotated by an expert slide reader at the Mahidol-Oxford Tropical Medicine Research Unit in Bangkok, Thailand (the originals can be found at NLM, ftp://lhcftp.nlm.nih.gov/Open-Access-Datasets/Malaria/).

Model .h5 files and .pb files for robustly detecting glaucoma from optical coherence tomography (OCT) images and for interpretability analysis via testing with concept activation vectors (TCAVs by Been Kim et al.). Further details described in paper "Robust and Interpretable Convolutional Neural Networks to Detect Glaucoma in OCT Images" in preparation/under review.

Example axial and coronal phase maps and post-treatment MRI from 68 thalamotomies in essential tremor patients and four pallidotomies in Parkinson's disease patients. From the manuscript "Using phase data from MR temperature imaging to visualize anatomy during MRI-guided focused ultrasound neurosurgery" published in 2020 in IEEE Trans. Med. Imaging.

This dataset contains the trained model that accompanies the publication of the same name:

 Anup Tuladhar*, Serena Schimert*, Deepthi Rajashekar, Helge C. Kniep, Jens Fiehler, Nils D. Forkert, "Automatic Segmentation of Stroke Lesions in Non-Contrast Computed Tomography Datasets With Convolutional Neural Networks," in IEEE Access, vol. 8, pp. 94871-94879, 2020, doi:10.1109/ACCESS.2020.2995632. *: Co-first authors

Publication Abstract

The PRIME-FP20 dataset is established for development and evaluation of retinal vessel segmentation algorithms in ultra-widefield (UWF) fundus photography (FP). PRIME-FP20 provides 15 high-resolution UWF FP images acquired using the Optos 200Tx camera (Optos plc, Dunfermline, United Kingdom), the corresponding labeled binary vessel maps, and the corresponding binary masks for the valid data region for the images. For each UWF FP image, a concurrently captured UWF fluorescein angiography (FA) is also included.