bioinformatics
PROTEIN STRUCTURE AND SYNTHETIC MULTI-VIEW CLUSTERING DATASETS
Multi-View Clustering (MVC) datasets used in the following paper:
Evolutionary Multi-objective Clustering Over Multiple Conflicting Data Views. Authors: Mario Garza-Fabre, Julia Handl, and Adán José-García. IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION. Accepted for publication, November 2022.
This entry contains all 420 datasets used in the paper, including:
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This study presented six datasets for DNA/RNA sequence alignment for one of the most common alignment algorithms, namely, the Needleman–Wunsch (NW) algorithm. This research proposed a fast and parallel implementation of the NW algorithm by using machine learning techniques. This study is an extension and improved version of our previous work . The current implementation achieves 99.7% accuracy using a multilayer perceptron with ADAM optimizer and up to 2912 giga cell updates per second on two real DNA sequences with a of length 4.1 M nucleotides.
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The relative binding affiniy values of all 8000 tripeptide sequenses are shown here. The values are standardized by isoforms so that the mean is zero and the variance is one. The sequences are ordered by the results of hierarchical cluster analysis.
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Large p small n problem is a challenging problem in big data analytics. There are no de facto standard methods available to it. In this study, we propose a tensor decomposition (TD) based unsupervised feature extraction (FE) formalism applied to multiomics datasets, where the number of features is more than 100000 while the number of instances is as small as about 100.
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Enrichment analysis performed by Enrichr toward genes associated with coronavirus infeciton
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The dataset is used to detect essential protein in uncertain PPI network.
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Computational modelling of metabolic processes has proven to be a useful approach to formulate our knowledge and improve our understanding of core biochemical systems that are crucial to maintain cellular functions. Recently, it has become evident that metabolism is not only responsible for generating the required energy and controlling the abundance of metabolites within a cell, but also has an important role in and influence on cellular fate specification.
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