This dataset has been developed based on the work of the GeoCOV19Tweets Dataset. The original work by Lamsal, R. runs network analysis on a similar dataset to understand the underlying relationship between countries and hashtags. The work did an analysis on roughly 300k number of [country, hashtag] relations from 190 countries and territories, and 5055 unique hashtags. This work pushes the number of relationships by 3 times.

Instructions: 

This dataset provides [place, hashtag] relationships in a Comma-separated values (CSV) file. Each line represents a relationship. You can simply use the CSV file as per your research needs.

However, if you need to change the place entity from city (currently the dataset uses ["place"]["name"] object) to country, you'll have to consider the ["place"]["country"] object instead. The sample script is provided with this dataset. The script takes in a list of tweet IDs present in a CSV file and hydrates the IDs to extract places and hashtags relationships. The script is written for twarc.

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3118 Views

BIMCV-COVID19- dataset is a large dataset with chest X-ray images CXR (CR, DX) and computed tomography (CT) imaging of no COVID-19 patients along with their radiographic findings, pathologies, polymerase chain reaction (PCR), immunoglobulin G (IgG) and immunoglobulin M (IgM) diagnostic antibody tests and radiographic reports from Medical Imaging Databank in Valencian Region Medical Image Bank (BIMCV).

Instructions: 

Once all the compressed files have been downloaded, use 00_extract_data.sh for their correct decompression. For more information, you could see the links on this page.

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297 Views

The MCData was designed and produced for mouth cavity detection and segmentation. This dataset can be utilized for training and testing of mouth cavity instance segmentation networks. This dataset is the first available dataset for detecting and segmentation of mouth cavity main components to the best of the authors’ knowledge.

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354 Views

BIMCV-COVID19+ dataset is a large dataset with chest X-ray images CXR (CR, DX) and computed tomography (CT) imaging of COVID-19 patients along with their radiographic findings, pathologies, polymerase chain reaction (PCR), immunoglobulin G (IgG) and immunoglobulin M (IgM) diagnostic antibody tests and radiographic reports from Medical Imaging Databank in Valencian Region Medical Image Bank (BIMCV).

Instructions: 

Once all the compressed files have been downloaded, use 00_extract_data.sh for their correct decompression. For more information, you could see the links on this page

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519 Views

Automatic detection of COVID-19 and community-acquired pneumonia on CT images with artificial intelligence

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656 Views

This data resource is an outcome of the NSF RAPID project titled "Democratizing Genome Sequence Analysis for COVID-19 Using CloudLab" awarded to University of Missouri-Columbia.

The resource contains the output of variant analysis (along with CADD scores) on human genome sequences obtained from the COVID-19 Data Portal. The variants include single nucleotide polymorphisms (SNPs) and short insert and deletes (indels).

Instructions: 

1. Download a .zip file.

2. Unzip the file and extract it into a folder. 

3. There will be two folders, namely, VCF and CADD_Scores. These folders contain the compressed .vcf and .tsv files. The .vcf files are filtered VCF files produced by the GATK best practice workflow for RNA-seq data. The reference genome hg19 was used. There is also a .xlsx file containing the run accession IDs (e.g., SRR12095153) and URLs (e.g., https://www.ebi.ac.uk/ena/browser/view/SRR12095153) from where the paired end sequences were downloaded. Complete description of the sequences can be found via these URLs.

4. Check for new .zip files.

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774 Views

The 3DLSC-COVID datset  includes a total of  1,805 3D chest CT scans with more than 570,000 CT slices were collected from 2 standard CT scanners of Liyuan Hospital, i.e.,  UIH uCT 510 and GE Optima CT600.  Among all CT scans, there were 794 positive cases of COVID-19, which were further confirmed by clinical symptoms and RT-PCR from January 16 to April 16, 2020.

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965 Views

This dataset is consist news articles related to COVID-19 from UK, India, Japan and South Korea newspapers. 

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1097 Views

The dataset contains the data on ICU-transferred (N=100) and Stable (N=131) patients with COVID-19 (N=156) and Non-COVID-19 viral pneumonia (N=75). Among COVID-19 patients of this study, 82 patients developed Refractory Respiratory Failure (RRF) or Severe Acute Respiratory Distress Syndrome (SARDS) and were transferred to Intensive Care Unit (ICU), 74 patients had a Stable course of disease and were not transferred to ICU.

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509 Views

 

Instructions: 

This repository contains:

  • age-stratified Covid-19 case and fatality data for different countries and at different points in time, and
  • an interactive Jupyter notebook for mediation analysis of age-related causal effects on case fatality rates,

published as part of the following paper:

"Simpson's paradox in Covid-19 case fatality rates: a mediation analysis of age-related causal effects". J von Kügelgen*, L Gresele*, B Schölkopf. (*equal contribution). https://arxiv.org/abs/2005.07180

We provide the following three separate datasets:

  • a dataset containing only the most recent numbers from: Argentina, China, Colombia, Italy, Netherlands, Portugal, South Africa, Spain, Sweden, Switzerland, South Korea and the Diamond Princess cruise ship (last checked: end of May 2020)
  • a longitudinal dataset containing several reports from Italy (9 March - 26 May 2020)
  • a longitudinal dataset containing several reports from Spain (22 March - 29 May 2020)

All numbers of confirmed cases and fatalities are stratified by age into groups of 10 years (0-9, 10-19, 20-29, 30-39, 40-49, 50-59, 60-69, 70-79, 80+), and contain the date and country of reporting, as well as links to the corresponding sources (generally health agenices/ministries, or scientific publications).

Please consult the paper and notebook for further details.

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511 Views

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