This repository contains code to apply the ESPER method to quasi-continuum models of biomolecules exhibiting multiple degrees of freedom, as described in Seitz et al. (2022, IEEE TCI). As inputs into ESPER, detailed instructions are also provided for generating custom synthetic datasets with increasing complexity to mirror known cryo-EM image attributes.

Categories:
74 Views

Switching vectors of an inverter with model predictive control were collected for different conditions of an induction machine. The induction machine had a rated speed of w=3000 rpm and a rated torque of T=1.20 N·m. The switching vectors were recorded as data series for the induction machine operating at different combinations of speed and torque at healthy and faulty states. Each data series consisted of 22000 switching vectors. Inter-turn short circuit fault was introduced over 2 turns (out of 104 turns) in one phase of the machine.

Categories:
193 Views

The file comprises of the sentences used as input for the given problem statement

Categories:
56 Views

The Open Big Healthy Brains (OpenBHB) dataset is a large (N>5000) multi-site 3D brain MRI dataset gathering 10 public datasets (IXI, ABIDE 1, ABIDE 2, CoRR, GSP, Localizer, MPI-Leipzig, NAR, NPC, RBP) of T1 images acquired across 93 different centers, spread worldwide (North America, Europe and China). Only healthy controls have been included in OpenBHB with age ranging from 6 to 88 years old, balanced between males and females.

Instructions: 

Please read carrefuly the following sections.

Dataset organization

This dataset comprises 3985 images for training and 666 images for test (kept hidden for the challenge), both dedicated to the OpenBHB challenge. Additionally, 628 images are available with missing label information (age, sex, or scanner details) and they are excluded for the current challenge. The exact content of this dataset is described in our paper.

The dataset is organized as follows:

  • All meta-data information (age, sex, site, acquisition setting, magnetic field strengh, etc.) can be found in participants.tsv.
  • Corresponding T1 images pre-processed with CAT12 (VBM), FSL (SBM) and Quasi-Raw can be found in training_data.
  • The pairs (site, acquisition setting) discretized used for the OpenBHB Challenge are in official_site_class_labels.tsv.
  • Additional T1 images with missing label information are in missing_label_data.
  • The metrics used for Quality Check (e.g Euler number for FreeSurfer) can be found in qc.tsv.

Resource:

  • the templates used during the VBM analysis can be found in cat12vbm_space-MNI152_desc-gm_TPM.nii.gz.
  • the templates used during the Quasi-Raw analysis can be found in quasiraw_space-MNI152_desc-brain_T1w.nii.gz.
  • the Region-Of-Interest (ROI) names corresponding to the default CAT12 atlas (Neuromorphometrics) and FSL Desikan and Destrieux atlases can be found in cat12vbm_labels.txt, freesurfer_atlas-desikan_labels.txt and freesurfer_atlas-destrieux_labels.txt respectively.
  • the surface-based feature names derived by FreeSurfer on both Desikan and Destrieux atlases are available in freesurfer_channels.txt.

Acknowledgements

If you use this dataset for your work, please use the following citation:

@article{dufumier2021openbhb,

      title={{OpenBHB: a Large-Scale Multi-Site Brain MRI Data-set for Age Prediction and Debiasing}},

      author={Dufumier, Benoit and Grigis, Antoine and Victor, Julie and Ambroise, Corentin and Frouin, Vincent and Duchesnay, Edouard},

      journal={Under review.},

      year={2021}

}

Licence and Data Usage Agreement

This dataset is under Licence CC BY-NC-SA 3.0. By downloading this dataset, you also agree to the most restrictive Data Usage Agreement (DUA) of all cohorts (see the Data Usage Agreement terms included in this dataset):

  • ABIDE 1 [1]. Licence term CC BY-NC-SA 3.0 (ShareAlike), DUA
  • ABIDE 2 [2]. Licence term CC BY-NC-SA 3.0, DUA
  • IXI [3]. Licence term CC0, DUA
  • CoRR [4] Licence term CC0, DUA
  • GSP [5]  Licence term  DUA
  • NAR [6] Licence term CC0
  • MPI-Leipzig [7] Licence term CC0
  • NPC [8] Licence term CC0
  • RBP [9,10] Licence term CC0
  • Localizer [11] Licence term CC BY 3.0

References

  1. [1] http://fcon_1000.projects.nitrc.org/indi/abide/abide_I.html
  2. [2] http://fcon_1000.projects.nitrc.org/indi/abide/abide_II.html
  3. [3] https://brain-development.org/ixi-dataset
  4. [4] Zuo, X.N., et al., An Open Science Resource for Establishing Reliability and Reproducibility in Functional Connectomics, (In Press)
  5. [5] Buckner, Randy L.; Roffman, Joshua L.; Smoller, Jordan W., 2014, "Brain Genomics Superstruct Project (GSP)", https://doi.org/10.7910/DVN/25833, Harvard Dataverse, V10
  6. [6] Nastase, S. A., et al., Narratives: fMRI data for evaluating models of naturalistic language comprehension. https://doi.org/10.18112/openneuro.ds002345.v1.0.1
  7. [7] Babayan, A., Erbey, M., Kumral, D. et al. A mind-brain-body dataset of MRI, EEG, cognition, emotion, and peripheral physiology in young and old adults. Sci Data 6, 180308 (2019). https://doi.org/10.1038/sdata.2018.308
  8. [8] Sunavsky, A. and Poppenk, J. (2020). Neuroimaging predictors of creativity in healthy adults. OpenNeuro. doi: 10.18112/openneuro.ds002330.v1.1.0
  9. [9] Li, P., & Clariana, R. (2019) Reading comprehension in L1 and L2: An integrative appraoch. Journal of Neurolinguistics, 50, 94-105.(https://doi.org/10.1016/j.jneuroling.2018.03.005)
  10. [10] Follmer, J., Fang, S., Clariana, R., Meyer, B., & Li, P (2018). What predicts adult readers' understanding of STEM texts? Reading and Writing, 31, 185-214.(https://doi.org/10.1007/s11145-017-9781-x)
  11. [11] Orfanos, D. P., Michel, V., Schwartz, Y., Pinel, P., Moreno, A., Le Bihan, D., & Frouin, V. (2017). The brainomics/localizer database. NeuroImage, 144, 309-314.
Categories:
958 Views

Dataset asscociated with a paper in 2021 IEEE/RSJ International Conference on Intelligent Robots and Systems

"Talk the talk and walk the walk: Dialogue-driven navigation in unknown indoor environments"

If you use this code or data, please cite the above paper.

 

Instructions: 

See the docs directory.

Categories:
123 Views

This is the original data and the fitted data from the paper Scalability in Computing and Robotics by Heiko Hamann and Andreagiovanni Reina. For more information please refer to the paper.

Categories:
92 Views

DATA PROVIDED PRIOR TO ACCEPTANCE OF THE ASSOCIATED MANUSCRIPT.

This dataset contains video sequences and stereo reconstruction results supporting the IEEE Access contribution "Stereo laryngoscopic impact site prediction for droplet-based stimulation of the laryngeal adductor reflex" (J. F. Fast et al.).

See readme file for further information.

Instructions: 

See provided readme file for instructions.

Categories:
142 Views

We focus on subjective and objective Point Cloud Quality Assessment (PCQA) in an immersive environment and study the effect of geometry and texture attributes in compression distortion. Using a Head-Mounted Display (HMD) with six degrees of freedom, we establish a subjective PCQA database named SIAT Point Cloud Quality Database (SIAT-PCQD). Our database consists of 340 distorted point clouds compressed by the MPEG point cloud encoder with the combination of 20 sequences and 17 pairs of geometry and texture quantization parameters.

Categories:
321 Views

GesHome dataset consists of 18 hand gestures from 20 non-professional subjects with various ages and occupation. The participant performed 50 times for each gesture in 5 days. Thus, GesHome consists of 18000 gesture samples in total. Using embedded accelerometer and gyroscope, we take 3-axial linear acceleration and 3-axial angular velocity with frequency equals to 25Hz. The experiments have been video-recorded to label the data manually using ELan tool.

Categories:
213 Views

We crawled large amounts of biomedical articles from PubMed for the keyphrase extraction system evaluation.

The articles, that consist of title, abstract and keyphrases provided by the authors, are used for the experiments.

In our paper, cancer-related biomedical articles are selected.

Instructions: 

Each document in the dataset consists of title, abstract and keyphrases provided by the authors.

Categories:
428 Views

Pages