Oriented Cell Dataset (OCD)

Citation Author(s):
Angelo
Angonezi
Universidade Federal do Rio Grande do Sul
Fernanda
Oliveira
Universidade Federal do Rio Grande do Sul
Juliano
Faccioni
Universidade Federal do Rio Grande do Sul
Camila
Cassel
Universidade Federal do Rio Grande do Sul
Débora
Santos de Sousa
Universidade Federal do Rio Grande do Sul
Samlai
Vedovatto
Universidade Federal do Rio Grande do Sul
Guido
Lenz
Universidade Federal do Rio Grande do Sul
Cláudio
Jung
Universidade Federal do Rio Grande do Sul
Lucas
Kirsten
Universidade Federal do Rio Grande do Sul
Submitted by:
Lucas Kirsten
Last updated:
Sat, 05/18/2024 - 16:45
DOI:
10.21227/3rk2-b882
License:
Creative Commons Attribution
470 Views
Categories:
Image Processing
Biomedical and Health Sciences
Computer Vision
Keywords:
cell detection; oriented bounding boxes; object detection; microscopic image; bright-field microscope
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Abstract 

OCD description. Cell lines A172 and U251: human glioblastoma; MCF7: human breast cancer; MRC5: human lung fibroblast; SCC25: human squamous cell carcinoma. Cultivation condition CTR: cells belonging to the control group - without the addition of chemotherapy; TMZ: cells treated with 50 μM temozolomide in some cultivation step.

Split

  • Train
    • Microscope: CytoSMART
    • Magnification: 10x/20x
    • Cell line: A172
      • Cultivation Condition: CTR
      • Number of Images: 52
      • Images Resolution: 1280px × 720px
    • Cell line: U251
      • Cultivation Condition: CTR
      • Number of Images: 4
    • Microscope: Zeiss Axiovert 200
    • Magnification: 10x
    • Cell line: MCF7
      • Cultivation Condition: CTR
      • Number of Images: 19
      • Images Resolution: 1388px × 1040px
    • Cell line: MRC5
      • Cultivation Condition: CTR
      • Number of Images: 20
  • Test
    • Microscope: CytoSMART
    • Magnification: 10x/20x
    • Cell line: A172
      • Cultivation Condition: CTR
      • Number of Images: 4
      • Images Resolution: 1280px × 720px
    • Cell line: U251
      • Cultivation Condition: CTR
      • Number of Images: 1
    • Microscope: Zeiss Axiovert 200
    • Magnification: 10x
    • Cell line: MCF7
      • Cultivation Condition: CTR
      • Number of Images: 10
      • Images Resolution: 1388px × 1040px
    • Cell line: MRC5
      • Cultivation Condition: CTR
      • Number of Images: 10
  • Annotators' Comparison
    • Microscope: CytoSMART
    • Magnification: 10x/20x
    • Cell line: A172
      • Cultivation Condition: CTR
      • Number of Images: 4
      • Images Resolution: 1280px × 720px
    • Cell line: A172
      • Cultivation Condition: TMZ
      • Number of Images: 1
    • Microscope: IncuCyte
    • Magnification: 10x
    • Cell line: U251
      • Cultivation Condition: TMZ
      • Number of Images: 1
      • Images Resolution: 1408px × 1040px
    • Microscope: Zeiss AxioCam
    • Magnification: 20x
    • Cell line: SCC25
      • Cultivation Condition: CTR
      • Number of Images: 2
      • Images Resolution: 600px × 512px
    • Microscope: Zeiss Axiovert 200
    • Magnification: 10x
    • Cell line: MCF7
      • Cultivation Condition: CTR
      • Number of Images: 1
      • Images Resolution: 1388px × 1040px
    • Cell line: MRC5
      • Cultivation Condition: CTR
      • Number of Images: 1
Instructions: 

Please refer to our pre-print publication: https://doi.org/10.1101/2024.04.05.588327

Or to our Github repository for real application example: https://github.com/LucasKirsten/Deep-Cell-Tracking-EBB

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