Confocal Microscopy Images of Cardiomyocyte Development Stages

Confocal Microscopy Images of Cardiomyocyte Development Stages

Citation Author(s):
A. Zahradnikova jr., P. Skrabanek
Submitted by:
Pavel Skrabanek
Last updated:
Wed, 06/05/2019 - 16:06
DOI:
10.21227/9emn-am50
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Abstract: 

Datasets of confocal microscopy images of cardiomyocytes aimed at development of image recognition systems. Images of live and healthy cardiomyocytes with fluorescently stained sarcolemma were assigned into 5 classes according to their development stages. The least developed cardiomyocytes were considered to be at stage 1 (class 1) while the most developed ones were assigned stage 5 (class 5). All other images belong to a class 0.

Instructions: 

We provide three datasets of the cardiomyocyte images. The resolution of images is 1024 x 1024 px. Datasets T-XXX-A and T-XXX-B are aimed at training of image recognition systems, while the dataset E-XXX-A is aimed at their evaluation. The dataset T-XXX-B is T-XXX-A extended with manually modified images, so that T-XXX-B is 3 times bigger than T-XXX-A. We also provide a Python script which allows augmentation of the images by their flipping and rotation. The script further allows resizing of the images and it generates a csv file that consists of records about each generated image. The records specify all operations that were used for its generation.

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[1] A. Zahradnikova jr., P. Skrabanek, "Confocal Microscopy Images of Cardiomyocyte Development Stages", IEEE Dataport, 2018. [Online]. Available: http://dx.doi.org/10.21227/9emn-am50. Accessed: Dec. 16, 2019.
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doi = {10.21227/9emn-am50},
url = {http://dx.doi.org/10.21227/9emn-am50},
author = {A. Zahradnikova jr.; P. Skrabanek },
publisher = {IEEE Dataport},
title = {Confocal Microscopy Images of Cardiomyocyte Development Stages},
year = {2018} }
TY - DATA
T1 - Confocal Microscopy Images of Cardiomyocyte Development Stages
AU - A. Zahradnikova jr.; P. Skrabanek
PY - 2018
PB - IEEE Dataport
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ER -
A. Zahradnikova jr., P. Skrabanek. (2018). Confocal Microscopy Images of Cardiomyocyte Development Stages. IEEE Dataport. http://dx.doi.org/10.21227/9emn-am50
A. Zahradnikova jr., P. Skrabanek, 2018. Confocal Microscopy Images of Cardiomyocyte Development Stages. Available at: http://dx.doi.org/10.21227/9emn-am50.
A. Zahradnikova jr., P. Skrabanek. (2018). "Confocal Microscopy Images of Cardiomyocyte Development Stages." Web.
1. A. Zahradnikova jr., P. Skrabanek. Confocal Microscopy Images of Cardiomyocyte Development Stages [Internet]. IEEE Dataport; 2018. Available from : http://dx.doi.org/10.21227/9emn-am50
A. Zahradnikova jr., P. Skrabanek. "Confocal Microscopy Images of Cardiomyocyte Development Stages." doi: 10.21227/9emn-am50