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Brats MICCAI Brain tumor dataset

Submission Dates:
to
Citation Author(s):
Spyridon (Spyros) Bakas (Perelman School of Medicine University of Pennsylvania)
Submitted by:
khurram Ejaz
Last updated:
DOI:
10.21227/hdtd-5j88
Data Format:
Links:

Abstract

BraTS has always been focusing on the evaluation of state-of-the-art methods for the segmentation of brain tumors in multimodal magnetic resonance imaging (MRI) scans. BraTS 2019 utilizes multi-institutional pre-operative MRI scans and focuses on the segmentation of intrinsically heterogeneous (in appearance, shape, and histology) brain tumors, namely gliomas. Furthemore, to pinpoint the clinical relevance of this segmentation task, BraTS’19 also focuses on the prediction of patient overall survival, via integrative analyses of radiomic features and machine learning algorithms. Finally, BraTS'19 intends to experimentally evaluate the uncertainty in tumor segmentations.

Instructions:

Here,  Instructions are to develop code to read the files. Where path of dataset should be set. From that path one counter read the files in particular sequence one by one.  From the path there will form four sub files in which dataset volumes are arrange in to T1, T2, Flair and T1Ce sequences. Every volume have 155 slices. Slices are infact MRI image. 155 slices are for one volume. And 210 Volumes are High grades Glioma dataset. Wereas 75 Volumes are in another type of glioma. Hence total is 285. Therefore for this huge dataset, Matlab is best plateform for programming but system memory should be more than 16 GB. Processor should be 3.0 Ghz. Hard disk should more 500 GB. 

The above images are just subset, Image are more than 200,000 but they are in form of nifti file and im readingthem through my own writen script. these image are taken from sequence T1, Volume is 1 and Slices are from 65 to 75.

khurram Ejaz Fri, 02/28/2020 - 11:32 Permalink

The above images are just subset, Image are more than 200,000 but they are in form of nifti file and im readingthem through my own writen script. these image are taken from sequence T1, Volume is 1 and Slices are from 65 to 75

shendy akny Thu, 10/24/2024 - 12:25 Permalink

The above images are just subset, Image are more than 200,000 but they are in form of nifti file and im readingthem through my own writen script. these image are taken from sequence T1, Volume is 1 and Slices are from 65 to 75.

khurram Ejaz Fri, 02/28/2020 - 11:33 Permalink
Can you provide me with tumor dataset i need it for my project
SANDHEEP NK Wed, 04/07/2021 - 15:26 Permalink
Can you provide the tumor dataset, required for my research.
BURAK TASCI Thu, 05/13/2021 - 21:22 Permalink
Dear whom it may concern, would you please provide me the data? I would like to use it for research purposes. Many thanks in advance. Best regards, Hee Kim
Hee Kim Tue, 08/24/2021 - 17:42 Permalink
Submitted by rajasekar on Wednesday, 22/09/2021 - 11:26 how to get this dataset for my project work?
RAJASEKAR O Wed, 09/22/2021 - 05:57 Permalink
I am a student and I need this data set for my research and my project. could you kindly share this data set with me my email is 70109433@student.uol.edu.pk I will be very grateful to you
Hashir Ali Thu, 03/16/2023 - 04:35 Permalink
I am a student studing medical deep learning and I need this data set for my project. could you kindly share this data set I will be very grateful to you :)
Abdullah Shahid Sun, 01/14/2024 - 05:19 Permalink

I am researcher at TUM and would like to access the dataset for a project.

Dmitry Fadeev Tue, 07/02/2024 - 08:36 Permalink

I am a student studing medical imaging senior project and I need this data set for my project.
Could you please share it with me?

 

Mays Neiroukh Mon, 10/14/2024 - 15:47 Permalink

Dear whom it may concern,
would you please provide me the data? I would like to use it for research purposes. Many thanks in advance.
Best regards,
Nurullah Tatar

Nurullah Tatar Tue, 04/15/2025 - 10:44 Permalink

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