Pulmonary lobe segmentation of COVID-19 CT scans

Citation Author(s):
Velmurugan
Balasubramanian
Indian institute of technology, Kharagpur
Suhasini
Balasubramaniam
Government medical college, Omandurar estate, Chennai
Debdoot
Sheet
Indian institute of technology, Kharagpur
Rachana
Sathish
Indian institute of technology, Kharagpur
Mahalakshumi
Visvanathan
Sri Venkateswara college of engineering, Chennai
Submitted by:
Velmurugan Bala...
Last updated:
Sun, 10/25/2020 - 12:37
DOI:
10.21227/3qe9-e178
Data Format:
License:
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Abstract 

We chose 8 publicly available CT volumes of COVID-19 positive patients which were available from https://doi.org/10.5281/zenodo.3757476 and used 3D slicer to generate volumetric annotations of 512*512 dimension for 5 lung lobes namely right upper lobe, right middle lobe, right lower lobe, left upper lobe and left lower lobe. These annotations are validated by a radiologist with over 15 years of experience. 

Instructions: 

CT volumes can be downloaded from https://doi.org/10.5281/zenodo.3757476

Volumetric annotations for 5 lobe segments namely right upper lobe, right middle lobe, right lower lobe, left upper lobe and left lower lobe are saved as segments 1 to 5 respectively. 

For scans with prefix coronacases_00x their corresponding annotations are uploaded with suffix lobes

The scans and annotations measure 512*512 and are in .nii format

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Submitted by Usha Diggi on Wed, 05/05/2021 - 05:57

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