This dataset contains .pcap files collected during the execution of variant calling on large number of human genomes using a cluster. The GATK4 variant calling pipeline was executed using AVAH in two testbeds, CloudLab and FABRIC. A 16-node cluster was used on CloudLab, and an 8-node cluster was used on FABRIC. The files were collected by running tcpdump on the network interfaces of the nodes.
This data resource is an outcome of the NSF RAPID project titled "Democratizing Genome Sequence Analysis for COVID-19 Using CloudLab" awarded to University of Missouri-Columbia.
The resource contains the output of variant analysis (along with CADD scores) on human genome sequences obtained from the COVID-19 Data Portal. The variants include single nucleotide polymorphisms (SNPs) and short insert and deletes (indels).