variant calling

A Dataset of Network Traffic Collected During Large-Scale Human Genome Sequence Analysis

This dataset contains .pcap files collected during the execution of variant calling on large number of human genomes using a cluster. The GATK4 variant calling pipeline was executed using AVAH in two testbeds, CloudLab and FABRIC. A 16-node cluster was used on CloudLab, and an 8-node cluster was used on FABRIC. The files were collected by running tcpdump on the network interfaces of the nodes.

Categories:: Biomedical and Health Sciences
Cloud Computing

838 Views