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Mouse brain lightfield-confocal stack dataset
- Citation Author(s):
- Submitted by:
- Josue Page
- Last updated:
- Tue, 05/17/2022 - 22:18
- DOI:
- 10.21227/eagc-ta82
- Data Format:
- Research Article Link:
- Links:
- License:
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Abstract
Dataset of fluorescent mice brain vessels Confocal 3D volumes aligned to Light-Field images.
Confocal:
- Single volume dimension: 1287x1287x64.
- Number of samples: 362
- Voxel size: 0.086x0.086x0.9 um.
- Objective: 40x/1.3 Oil.
- Stain: tomato lectin (DyLight594 conjugated, DL-1177, Vector Laboratories).
LightField:
- Image dimensions 1287x1287.
- PixelSize: 3.45 um.
- Pixels per lenslet: 33x33.
- Lenslet Pitch: 112 um.
- MLA2Sensor distance: 2500um.
- Tube-lens focal length: 165mm.
- Objective: 40x/0.9 Air.
H5 containing:
- volData: confocal volumes 1287x1287x64 voxels.
- LFData: LF 4D tensor 33x33x39x39 (Angular coord x, angular coord y, spatial coord x, spatial coord y).
- gridCoords: image grid positions.
Instructions:
Rename the file extension from hdf5 to .h5