Datasets
Standard Dataset
Multi-profile and Multi-omic data for LUAD
- Citation Author(s):
-
DiegoSalazar
Universidad de los Andes - Submitted by:
- Diego Salazar
- Last updated:
- Sun, 09/05/2021 - 00:14
- DOI:
- 10.21227/wdh5-4435
- Data Format:
- License:
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Abstract
Columns are genes, miRNAs, drugs, or cnv. Rows are patient identifiers or cell lines.
Instructions:
The datasets contain the omics profiles of [cnv, drug, mirna, mrna] with the following dimensions:
..................................
cnv dimensions for ccle: 604 x 1280
cnv dimensions for tcga: 444 x 1280
--''--
drug dimensions for ccle: 604 x 262
drug dimensions for tcga: 444 x 262
--''--
mirna dimensions for ccle: 604 x 336
mirna dimensions for tcga: 444 x 336
--''--
mrna dimensions for ccle: 604 x 2117
mrna dimensions for tcga: 444 x 2117
Additionally, the R and Theta constraints are loaded. The dimensions depend on the specified features. For example, drug_drug_theta.csv contains a matrix of dimensions 262 x 262.
Dataset Files
- ccle_cnv.csv (5.09 MB)
- ccle_drug.csv (1.03 MB)
- ccle_mirna.csv (1.34 MB)
- ccle_mrna.csv (8.25 MB)
- tcga_cnv.csv (3.75 MB)
- tcga_mirna.csv (925.68 kB)
- tcga_mrna.csv (6.15 MB)
- drug_drug_theta.csv (147.83 kB)
- mirna_drug_r.csv (183.57 kB)
- mirna_mirna_theta.csv (234.15 kB)
- mirna_mrna_r.csv (1.39 MB)
- mrna_mrna_theta.csv (8.60 MB)
