LncRNA and Protein Interactions

Citation Author(s):
Cong
Shen
Tianjin University of Technology
Submitted by:
Cong Shen
Last updated:
Sun, 05/14/2023 - 00:42
DOI:
10.21227/fp9j-s491
License:
Creative Commons Attribution
96 Views
Categories:
Artificial Intelligence
Biomedical and Health Sciences
Keywords:
co-training, graph convolutional network, integration strategy, kernel combination, lncRNA-protein interactions, similarity matrix
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Abstract 

These are the two lncRNA and protein interactions (LPI) datasets, which collected and built by Zhang et al. and Zheng et al., respectively.

dataset1: Wen Zhang, Qianlong Qu, Yunqiu Zhang, Wei Wang. The linear neighborhood propagation method for predicting long non-coding RNA-protein interactions. Neurocomputing 273: 526-534 (2018)

dataset2: Zheng, X., Wang, Y., Tian, K. et al. Fusing multiple protein-protein similarity networks to effectively predict lncRNA-protein interactions. BMC Bioinformatics 18 (Suppl 12), 420 (2017). https://doi.org/10.1186/s12859-017-1819-1

Instructions: 

The dataset1 fold is comprised of three files including interaction_dataset1.csv, LncRNAName_dataset1.txt, and ProteinName_dataset1.txt.

The dataset1 fold is comprised of three files including interaction_dataset2.csv, LncRNAName_dataset2.txt, and ProteinName_dataset2.txt.

Dataset Files

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