An annotated dataset of tongue images

Citation Author(s):
Chunlei
Tang
Dan
Shi
Xiao
Shi
Yun
Xiong
Submitted by:
Chunlei Tang
Last updated:
Wed, 07/01/2020 - 03:41
DOI:
10.21227/mtt8-q366
Links:
License:
0
0 ratings - Please login to submit your rating.

Abstract 

To develop a non-invasive assessment tool using machine learning in supporting a timely, accurate diagnosis in the elderly, we created an annotated dataset of 668 tongue images collected from hospitalized geriatric patients in a tertiary hospital in Shanghai, China. Images were captured via a light-field camera using CIELAB color space (to simulate human visual perception) and then were manually labeled by a panel of subject matter experts after chart reviewing patients’ clinical information documented in the hospital’s information system. 

Instructions: 

Subject

Aging

Specific subject area

Diagnosis – Image and text data analysis

Hospitalized geriatric patients are a highly heterogeneous group often with variable diseases and conditions. Physicians, and geriatricians especially, are devoted to seeking non-invasive testing tools to support a timely, accurate diagnosis. Chinese tongue diagnosis, mainly based on the color and texture of the tongue, offers a unique solution.

Type of data

Free-text document

Table

Image

Each patient has a folder with 1 face image, 1 tongue image, and 2 narrative documents. An additional summary formed by table is provided.

How data were acquired

We used a patented light-field camera (CN201520303463.5) called the intelligent mirror using CIE L*a*b* color space. Our data acquisition was handled in a standardized way (i.e., ensuring consistent sitting height and placement of the intelligent mirror) as much as possible.

Data format

The face and tongue images belong to raw data and were taken at 600 pixels per inch (about 42.3 µm per pixel) and saved as a *.jpg with minimum compression (10% compression max). One narrative document is annotated and contains the parameters generated by the intelligent mirror when creating the face and tongue images, and the other contains the annotation results from the expert panel (e.g., vital signs, clinical imaging examination, and laboratory indicators).

Parameters for data collection

The study was conducted at a Chinese tertiary, comprehensive hospital. We recruited hospitalized subjects (excluding minority groups or other sensitive or disempowered populations) in the Geriatrics Department beginning in January 1, 2019. Images were captured via a light-field camera using CIELAB color space (to simulate the human visual perception) and then were manually labeled by a panel of subject matter experts after chart reviewing patients’ clinical information documented in the hospital’s information system.

Description of data collection

Data acquisition and image annotation was conducted by subject matter experts including four fully credentialed senior-level physicians (i.e., associate chief physician and above), one resident, and two medical students. One medical student was in charge of data acquisition. The resident consolidated patients’ previous chronic medical history, clinical imaging examination, and laboratory indicators. One physician diagnosed patients’ constitutional types. Another physician gave a final admission diagnosis by considering the patient’s constitution based on both traditional Chinese medicine and Western medicine. Constitutional types are based on TCM analysis and differentiation of pathological conditions in accordance with the eight principal syndromes, namely 八纲辨证, including yin and yang (阴阳), exterior and interior (表里), cold and heat (寒热), and hypofunction and hyperfunction (虚实). All the information from the free-text data labeling was documented digitally by one medical student in Chinese and translated into English. The treatment plan corresponding to the admission diagnosis was reviewed and annotated by the remaining two physicians.

A total of 12 items must be merged into an annotated document, including various indices related to tongue diagnosis, physical or mental factors, clinicians’ observations, and more. To mitigate this, we used a previously designed algorithm to generate templates automatically. Under the K-means paradigm, our previously designed algorithm (1) embedded each annotated document into a vector representation for the first 200 patients, (2) partitioned those vectors into several (e.g., K=10) clusters, and (3) designated each cluster representative as a prototype template, or a vector of real annotated document closest to the centroid. For the remaining 468 patients, we used the specified prototype template to assist with the annotation.

Data source location

Shanghai, CHN

Cambridge, MA, USA

Comments

Dear authors,

 

Thank you so much for making this dataset available to the community which can enable research on this very attractive and high potential area that is integrative medicine (combining both chinese and western medicine). 

 

Best regards

Hugo Ferreira

 

Submitted by Hugo Ferreira on Mon, 12/30/2019 - 09:49

Dear Authors,

 

Thanks for this interesting paper and for sharing the dataset.

 

Best regards,

Narges Manouchehri

Submitted by Narges Manouchehri on Sun, 04/26/2020 - 13:54

Will share but now is on preparing.

Submitted by Chunlei Tang on Sun, 04/26/2020 - 19:56

HI

where can we access the full dataset

Submitted by Sanjana K on Thu, 07/09/2020 - 00:32

请问在哪可以下载所有数据呢?

Submitted by andy tian on Mon, 08/31/2020 - 04:12

hi
where can we access the full dataset?

Submitted by Harry Chen on Thu, 10/08/2020 - 01:13

请问在哪可以下载所有数据呢?

Submitted by Lin Jian-Ho on Sun, 03/07/2021 - 04:07

Thanks for interests. Please see the info below:
Repository name: Harvard Dataverse
Data identification number: N/A
Direct URL to data: https://doi.org/10.7910/DVN/COJZMQ

Anyway if use please reference this paper: Dan Shi, Chunlei Tang, Suzanne V. Blackley, Liqin Wang, Jiahong Yang, Yanming He, Samuel I. Bennett, Yun Xiong, Xiao Shi, Li Zhou, David W. Bates. An annotated dataset of tongue images supporting geriatric disease diagnosis, Data in Brief, Volume 32, 2020, 106153, ISSN 2352-3409, https://doi.org/10.1016/j.dib.2020.106153.

Submitted by Chunlei Tang on Sun, 03/07/2021 - 08:26