Beta Lactamase Sequences

Beta Lactamase Sequences

Citation Author(s):
Muhammad Adeel
Ashraf
University of Management and Technology
Submitted by:
Muhammad Ashraf
Last updated:
Mon, 10/21/2019 - 09:55
DOI:
10.21227/jjwj-py59
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Abstract: 

A well-known publicly available database namely UniProt was the main source for collection beta-lactamase and non-beta-lactamase protein sequences. To obtain relevant positive sequences ‘beta-lactamase’ was used as a keyword. The dataset was meticulously collected by excluding ambiguous sequences, only those sequences were selected which were not annotated with dubious words like potential, by similarity or probable. Moreover, the sequence should be a complete sequence and hence should not be annotated with words like fragment. beta-lactamase protein sequences as well. A total of 2172 sequences of β-lactamases were obtained after selecting representative sequences using CD-HIT. Similarly, non-beta-lactamase sequences were also collected. UniProt database was used to collect a set of 3463 non-beta-lactamase sequences.

Instructions: 

1. A well-known publicly available database namely UniProt: https://www.uniprot.org/ was the main source for  the collection of beta-lactamase and non-beta-lactamase protein sequences.

2. To obtain relevant positive sequences ‘beta-lactamase’ was used as a keyword.

3. The dataset was meticulously collected by excluding ambiguous sequences; only those sequences were selected which were not annotated with dubious words like potential, by similarity or probable.

4. Moreover, the sequence should be a complete sequence and hence should not be annotated with words like fragment. beta-lactamase protein sequences as well.

5. A total of 2172 sequences of β-lactamases were obtained after selecting representative sequences using CD-HIT.

6. Similarly, non-beta-lactamase sequences were also collected. UniProt database was used to collect a set of 3463 non-beta-lactamase sequences.

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[1] Muhammad Adeel Ashraf, "Beta Lactamase Sequences", IEEE Dataport, 2019. [Online]. Available: http://dx.doi.org/10.21227/jjwj-py59. Accessed: Mar. 31, 2020.
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doi = {10.21227/jjwj-py59},
url = {http://dx.doi.org/10.21227/jjwj-py59},
author = {Muhammad Adeel Ashraf },
publisher = {IEEE Dataport},
title = {Beta Lactamase Sequences},
year = {2019} }
TY - DATA
T1 - Beta Lactamase Sequences
AU - Muhammad Adeel Ashraf
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PB - IEEE Dataport
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Muhammad Adeel Ashraf. (2019). Beta Lactamase Sequences. IEEE Dataport. http://dx.doi.org/10.21227/jjwj-py59
Muhammad Adeel Ashraf, 2019. Beta Lactamase Sequences. Available at: http://dx.doi.org/10.21227/jjwj-py59.
Muhammad Adeel Ashraf. (2019). "Beta Lactamase Sequences." Web.
1. Muhammad Adeel Ashraf. Beta Lactamase Sequences [Internet]. IEEE Dataport; 2019. Available from : http://dx.doi.org/10.21227/jjwj-py59
Muhammad Adeel Ashraf. "Beta Lactamase Sequences." doi: 10.21227/jjwj-py59