Drosophila Melanogaster Genome

Abstract: 

Drosophila Melanogaster, the common fruit fly, is a model organism which has been extensively used in entymological research. It is one of the most studied organisms in biological research, particularly in genetics and developmental biology.

When its not being used for scientific research, D. melanogaster is a common pest in homes, restaurants, and anywhere else that serves food. They are not to be confused with Tephritidae flys (also known as fruit flys).

https://en.wikipedia.org/wiki/Drosophila_melanogaster

This genome was first sequenced in 2000. It contains four pairs of chromosomes (2,3,4 and X/Y). More than 60% of the genome appears to be functional non-protein-coding DNA.

Instructions: 

iles in this Dataset
 
Drosophila Melanogaster Genome

  • genome.fa

The assembled genome itself is presented here in FASTA format. Each chromosome is a different sequence of nucleotides. Repeats from RepeatMasker and Tandem Repeats Finder (with period of 12 or less) are show in lower case; non-repeating sequence is shown in upper case.
 
Meta Information
There are 3 additional files with meta information about the genome.
 
meta-cpg-island-ext-unmasked.csv
This file contains descriptive information about CpG Islands in the genome.
 
https://en.wikipedia.org/wiki/CpG_site
 
meta-cytoband.csv
This file describes the positions of cytogenic bands on each chromosome.
 
https://en.wikipedia.org/wiki/Cytogenetics
 
meta-simple-repeat.csv
This file describes simple tandem repeats in the genome.
 
https://en.wikipedia.org/wiki/Repeated_sequence_(DNA) https://en.wikipedia.org/wiki/Tandem_repeat

Dataset Files

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Dataset Details

Citation Author(s):
Myles O'Neill
Submitted by:
Alex Outman
Last updated:
Tue, 06/14/2016 - 10:23
DOI:
10.5072/FK2GT5M94X
Data Format:
Links:
 
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[1] Myles O'Neill, "Drosophila Melanogaster Genome", IEEE Dataport, 2016. [Online]. Available: http://dx.doi.org/10.5072/FK2GT5M94X. Accessed: Feb. 19, 2018.
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doi = {10.5072/FK2GT5M94X},
url = {http://dx.doi.org/10.5072/FK2GT5M94X},
author = {Myles O'Neill },
publisher = {IEEE Dataport},
title = {Drosophila Melanogaster Genome},
year = {2016} }
TY - DATA
T1 - Drosophila Melanogaster Genome
AU - Myles O'Neill
PY - 2016
PB - IEEE Dataport
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Myles O'Neill. (2016). Drosophila Melanogaster Genome. IEEE Dataport. http://dx.doi.org/10.5072/FK2GT5M94X
Myles O'Neill, 2016. Drosophila Melanogaster Genome. Available at: http://dx.doi.org/10.5072/FK2GT5M94X.
Myles O'Neill. (2016). "Drosophila Melanogaster Genome." Web.
1. Myles O'Neill. Drosophila Melanogaster Genome [Internet]. IEEE Dataport; 2016. Available from : http://dx.doi.org/10.5072/FK2GT5M94X
Myles O'Neill. "Drosophila Melanogaster Genome." doi: 10.5072/FK2GT5M94X